# Lesion Segmentation in the MRI scans of patients after stroke
RAMP starting kit

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<img src="https://raw.githubusercontent.com/ramp-kits/stroke_lesions/master/figs/stroke_logo.png" width="250px" />
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[![Build Status](https://github.com/ramp-kits/stroke_lesions/workflows/build/badge.svg?branch=master&event=push)](https://github.com/ramp-kits/stroke_lesions/actions)

## Getting started

### Install

To run a submission and the notebook you will need the dependencies listed
in `requirements.txt`. You can install install the dependencies with the
following command-line:

```bash
pip install -U -r requirements.txt
```

If you are using `conda`, we provide an `environment.yml` file for similar
usage.

### Challenge description

Get started on this RAMP with the
[dedicated notebook](stroke_lesions_starting_kit.ipynb).

### Test a submission

The submissions need to be located in the `submissions` folder. For instance
for `my_submission`, it should be located in `submissions/my_submission`.

To run a specific submission, you can use the `ramp-test` command line:

```bash
ramp-test --submission my_submission
```

You can get more information regarding this command line:

```bash
ramp-test --help
```

### To go further

You can find more information regarding `ramp-workflow` in the
[dedicated documentation](https://paris-saclay-cds.github.io/ramp-docs/ramp-workflow/stable/using_kits.html)

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            <img src="https://raw.githubusercontent.com/ramp-kits/stroke_lesions/master/figs/DATAIA-h.png" width="500px" ALIGN=”left”/>
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